Welcome to MD_plotting_toolkit’s documentation!

MD_plotting_toolkit is a Python package providing useful tools for visualizing simulation data obtained from molecular dynamics (especially for GROMACS).

Getting started:

• Introduction
• Installation

Tutorials:

• Example input data for the tutorials
• Basic usage of plot_xy
  • Example 1: TLDR - the possibly simplest command of plot_xy
  • Example 2: Making the figure as informative as possible
  • Example 3: Unit conversion, data scaling and truncation
  • Example 4: Plotting multiple datasets in one figure
  • Example 5: plot_xy can possibly deal with corrupted files
• Basic usage of plot_xyz
• Basic usage of plot_hist
  • Example 1: The most commonly used functionalities of plot_hist
  • Example 2: Assessment of the flatness of a histogram
• Basic usage of plot_bar
• Basic usage of plot_violin
• Basic usage of plot_matrix
• Basic usage of combine_plots
  • Example 1: Making the input figures as the subplots of the new figure
  • Example 2: Embed the first input figure in the second

API documentation:

• MD_plotting_toolkit.data_processing
• MD_plotting_toolkit.plotting_utils
• MD_plotting_toolkit.utils

Indices and tables

• Index

• Module Index

• Search Page